Acknowledgements
GSAA implementations use many software and
libraries. We thank their developers.
GSEA |
Gene Set Enrichment Analysis | www.broadinstitute.org/gsea |
MSigDB |
Molecular Signatures Database | www.broadinstitute.org/gsea/msigdb |
Jide Software |
Java/Swing components | jidesoft.com |
The Java 2 Platform |
Language that the GSAA is written in | java.sun.com |
| JGoodies | Java User Interface Design | www.jgoodies.com |
| foxtrot | Java event handling mechanism for GUI | foxtrot.sourceforge.net |
dom4j |
XML Parser | www.dom4j.org |
itext |
Java PDF library | www.lowagie.com/iText |
Jakarta POI |
Java excel reporting | jakarta.apache.org/poi |
JFreeChart |
Graphing library for Java | www.object-refinery.com/jfreechart |
JUnit |
Unit testing API | www.junit.org |
Apache Commons |
Reusable Java components | commons.apache.org |
log4j |
Logging toolkit for Java | jakarta.apache.org/log4j |
Oro |
Regular expressions library in Java | jakarta.apache.org/oro |
| Trove | High performance collections library from GNU | trove4j.sourceforge.net |